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@Justin You could probably use CSS3 selectors to only grab the ones you want to remove. The code above removes them all. I've have a play with some selectors, and find one that works, it may be the case that you could just look at the category ID and hide it that way.
Edit: I'm not sure where this would be added, but you could use the ID of the category, so
#category-2 at the end of the code should only get rid of that one. I only have IE on this PC, so I'm unable to test properly (Firebug ftw), but that should be what you need to get started.