@psychobunny Not really sure what the issue was. I started it again today and it was working. I never touched anything but it works now. Thanks for your help!

I figured it out. When I was having nginx proxy the request to the subdomain I was modifying the existing conf file for that app which has to be renamed from appname.conf to appname.custom.conf otherwise serverpilot will overwrite the file. There was a line referencing another file in appname.d folder which was sending all requests to apache which was breaking it. I now have it up and running.

@julian This works perfectly! Thank you!